About

We investigated the differential effects of APOE alleles on the microglia and astrocyte transcriptome in the absence and presence of neuritic plaques (NPs) using bulk brain RNA-seq data from two large brain banks and performed follow-on experiments in APOE knock-in mice.

Setup

Install R to run our code.

Documentation

To read our documented code, please visit mindds.github.io/apoe-glia or see below.

Functions

ROSMAP

MSBB

qPCR Analysis

Code Availability

Our full codebase is available for download on GitHub.

Corrections

If you see mistakes or want to suggest changes, please create an issue on the source repository.